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Structure of thrombin inhibited by AERUGINOSIN298-A from a BLUE-GREEN ALGA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HGT PDB ENTRY 1HGT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.3 pH 7.3
Crystal Properties Matthews coefficient Solvent content 2.61 52.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.97 α = 90 b = 72.48 β = 100.93 c = 72.24 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 IMAGE PLATE RIGAKU NO MIRRORS 1995-03-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 15 70 0.082 8 3.3 15999 2 29.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.25 47 0.18 2.4 2.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1HGT 2.1 7 2 15999 70 0.15 31.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 31.9 p_staggered_tor 24 p_scangle_it 3.8 p_planar_tor 3.1 p_scbond_it 2.66 p_mcangle_it 2.14 p_mcbond_it 1.3 p_multtor_nbd 0.345 p_xyhbond_nbd 0.323 p_singtor_nbd 0.25
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 31.9 p_staggered_tor 24 p_scangle_it 3.8 p_planar_tor 3.1 p_scbond_it 2.66 p_mcangle_it 2.14 p_mcbond_it 1.3 p_multtor_nbd 0.345 p_xyhbond_nbd 0.323 p_singtor_nbd 0.25 p_chiral_restr 0.197 p_planar_d 0.06 p_angle_d 0.04 p_plane_restr 0.036 p_bond_d 0.018 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2452 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 1
Software Software Software Name Purpose RIGAKU data collection RIGAKU data reduction X-PLOR model building PROLSQ refinement X-PLOR refinement RIGAKU data scaling X-PLOR phasing