1A7Q

FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K) HIGH AFFINITY EXPRESSED VARIANT CONTAINING SER26L->GLY, ILE29L->THR, GLU81L->ASP, THR97L->SER, PRO240H->LEU, ASP258H->ALA, LYS281H->GLU, ASN283H->ASP AND LEU312H->VAL


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1VFAPDB ENTRY 1VFA

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.3948.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.307α = 90
b = 90.307β = 90
c = 56.847γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray269IMAGE PLATEMARRESEARCH1992-07-21M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1213.6897.80.0974.813476525.08
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.0579.70.33.7

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB ENTRY 1VFA2615836158360.17821.7
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor18.93
p_special_tor15
p_transverse_tor12.34
p_scangle_it4.39
p_scbond_it2.978
p_planar_tor2.519
p_mcangle_it2.237
p_mcbond_it1.506
p_singtor_nbd0.161
p_multtor_nbd0.157
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor18.93
p_special_tor15
p_transverse_tor12.34
p_scangle_it4.39
p_scbond_it2.978
p_planar_tor2.519
p_mcangle_it2.237
p_mcbond_it1.506
p_singtor_nbd0.161
p_multtor_nbd0.157
p_chiral_restr0.153
p_xyhbond_nbd0.146
p_planar_d0.058
p_angle_d0.055
p_bond_d0.019
p_plane_restr0.015
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1681
Nucleic Acid Atoms
Solvent Atoms47
Heterogen Atoms

Software

Software
Software NamePurpose
MOSFLMdata reduction
AGROVATA/ROTAVATAdata reduction
ALMN/CCP4model building
CCP4refinement
Agrovatadata scaling
ROTAVATAdata scaling
CCP4phasing