1BDE
HELICAL STRUCTURE OF POLYPEPTIDES FROM THE C-TERMINAL HALF OF HIV-1 VPR, NMR, 20 STRUCTURES
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | TOCSY | 50% TFE-D3/50% H2O | 10 mM | 5.0 | 1 atm | 298 | ||
2 | NOESY | 50% TFE-D3/50% H2O | 10 mM | 5.0 | 1 atm | 298 | ||
3 | DQFCOSY | 50% TFE-D3/50% H2O | 10 mM | 5.0 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX600 | 600 |
NMR Refinement | ||
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Method | Details | Software |
DISTANCE GEOMETRY AND SIMULATED ANNEALING | INITIAL STRUCTURE CALCULATION WAS PERFORMED USING DYANA 1.4. THE BEST 100 STRUCTURES WERE FURTHER REFINED IN X-PLOR 3.8. | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | LOWEST ENERGY |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (n/a) |
Additional NMR Experimental Information | |
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Details | THE STRUCTURE WAS DETERMINED USING 2D 1H NMR SPECTROSCOPY. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 3.8 | BRUNGER |
2 | structure solution | X-PLOR | 3.8 |