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HUMAN PHOSPHATIDYLETHANOLAMINE BINDING PROTEIN IN COMPLEX WITH CACODYLATE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BD9 PDB ENTRY 1BD9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 PROTEIN WAS CRYSTALLIZED FROM 28-32% PEG 4000/6000/8000, 200-300 MM SODIUM ACETATE, 100MM SODIUM CACODYLATE., pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.2 36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.43 α = 90 b = 61.63 β = 101.09 c = 67.92 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 1997-04-15 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX7.2 SRS PX7.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 95.6 0.055 16.2 2.4 38803 -3 19.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 94.9 0.28 2.6 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BD9 1.75 20 33851 1773 95 0.235 0.2262 0.286 0.267 SHELLS 24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 22 p_staggered_tor 15.7 p_planar_tor 3.7 p_scangle_it 1.9 p_mcangle_it 1.6 p_scbond_it 1.2 p_mcbond_it 1.1 p_multtor_nbd 0.239 p_singtor_nbd 0.172 p_chiral_restr 0.111
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 22 p_staggered_tor 15.7 p_planar_tor 3.7 p_scangle_it 1.9 p_mcangle_it 1.6 p_scbond_it 1.2 p_mcbond_it 1.1 p_multtor_nbd 0.239 p_singtor_nbd 0.172 p_chiral_restr 0.111 p_planar_d 0.028 p_angle_d 0.025 p_plane_restr 0.021 p_bond_d 0.009 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2919 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 10
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling