☰ Navigation Tabs
E1M, A116K MUTANT OF RH. BLASTICA PORIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PRN PDB ENTRY 1PRN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 DROP: PROTEIN 5MG/ML, TRISCL 20MM PH=7.2, LICL 300MM, NAN3 3 MM, PEG600 10-18% RESERVOIR: PEG600 30-38%
Crystal Properties Matthews coefficient Solvent content 4.26 66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.25 α = 90 b = 104.25 β = 90 c = 124.93 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MARRESEARCH 1997-07-17 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 19.54 99.29 0.056 0.056 8.8 3.7 25831 34.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.19 2.31 95.4 0.223 0.223 3.3 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER THROUGHOUT PDB ENTRY 1PRN 2.19 19.54 1 25831 2600 99.29 0.153 0.1538 0.181 SAME AS WILD-TYPE 33.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 19.9 p_staggered_tor 16.9 p_scangle_it 4.597 p_planar_tor 3.9 p_scbond_it 2.893 p_mcangle_it 1.843 p_mcbond_it 1.562 p_multtor_nbd 0.25 p_chiral_restr 0.229 p_hb_or_metal_coord 0.188
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 19.9 p_staggered_tor 16.9 p_scangle_it 4.597 p_planar_tor 3.9 p_scbond_it 2.893 p_mcangle_it 1.843 p_mcbond_it 1.562 p_multtor_nbd 0.25 p_chiral_restr 0.229 p_hb_or_metal_coord 0.188 p_singtor_nbd 0.188 p_xyhbond_nbd 0.188 p_planar_d 0.05 p_angle_d 0.025 p_bond_d 0.022 p_plane_restr 0.0176 p_angle_deg p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2167 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 63
Software Software Software Name Purpose CCP4 model building REFMAC refinement MOSFLM data reduction CCP4 data scaling CCP4 phasing