☰ Navigation Tabs
HEMOGLOBIN (ALPHA + MET) VARIANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BZ0 HBA STRUCTURE, PDB FILE IN BNL-25483
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 2.3 M AMMONIUM SULFATE 0.3 M AMMONIUM PHOSPHATE PH 6.5 10 MM FERROUS CITRATE
Crystal Properties Matthews coefficient Solvent content 2.19 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.3 α = 90 b = 83.6 β = 99.4 c = 53.8 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 AREA DETECTOR SDMS 1992-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 25 83.9 0.0528 0.0528 14 6.5 61802
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.59 1.72 66.6 0.196 0.1962 2.48 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT HBA STRUCTURE, PDB FILE IN BNL-25483 1.59 8 2 61150 54150 5456 83.9 0.17 0.1556 0.224 0.203 OTHER REFLECTIONS COMMON WITH THE TEST SET FOR PDB SUBMISSION BNL-25483 WERE
SELECTED FOR THE TEST SET 20.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.2 p_staggered_tor 19.7 p_scangle_it 10.877 p_scbond_it 7.589 p_mcangle_it 3.796 p_planar_tor 2.9 p_mcbond_it 2.675 p_singtor_nbd 0.17 p_multtor_nbd 0.162 p_xyhbond_nbd 0.143
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.2 p_staggered_tor 19.7 p_scangle_it 10.877 p_scbond_it 7.589 p_mcangle_it 3.796 p_planar_tor 2.9 p_mcbond_it 2.675 p_singtor_nbd 0.17 p_multtor_nbd 0.162 p_xyhbond_nbd 0.143 p_chiral_restr 0.14 p_planar_d 0.049 p_angle_d 0.03 p_bond_d 0.013 p_plane_restr 0.013 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4400 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms 172
Software Software Software Name Purpose X-PLOR model building PROLSQ refinement SDMS data reduction SDMS data scaling X-PLOR phasing