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HEMOGLOBIN (ALPHA V1M) MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BZ0 HBA STRUCTURE, PDB FILE 1BZ0.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 2.3 M AMMONIUM SULFATE 0.3 M AMMONIUM PHOSPHATE PH 6.5 10 MM FERROUS CITRATE, pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.19 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.3 α = 90 b = 83.6 β = 99.4 c = 53.8 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 AREA DETECTOR SDMS 1992-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 25 88.7 0.0477 0.05477 16.6 7 64636
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.59 1.72 73.4 0.1532 0.1532 3.7 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT HBA STRUCTURE, PDB FILE 1BZ0. 1.59 8 2 64010 57534 5777 88.7 0.163 0.1561 0.214 0.1578 OTHER REFLECTIONS COMMON WITH THE TEST SET FOR PDB FILE 1BZ0 WERE
SELECTED FOR THE TEST SET 20.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.3 p_staggered_tor 19.9 p_scangle_it 12.307 p_scbond_it 8.607 p_mcangle_it 3.891 p_planar_tor 3.3 p_mcbond_it 2.757 p_singtor_nbd 0.172 p_multtor_nbd 0.162 p_chiral_restr 0.156
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.3 p_staggered_tor 19.9 p_scangle_it 12.307 p_scbond_it 8.607 p_mcangle_it 3.891 p_planar_tor 3.3 p_mcbond_it 2.757 p_singtor_nbd 0.172 p_multtor_nbd 0.162 p_chiral_restr 0.156 p_xyhbond_nbd 0.15 p_planar_d 0.054 p_angle_d 0.034 p_bond_d 0.015 p_plane_restr 0.015 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4386 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 172
Software Software Software Name Purpose X-PLOR model building PROLSQ refinement SDMS data reduction SDMS data scaling X-PLOR phasing