☰ Navigation Tabs
REDUCED D-AMINO ACID OXIDASE FROM PIG KIDNEY IN COMPLEX WITH IMINO-TRP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KIF PDB ENTRY 1KIF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.3 PROTEIN WAS CRYSTALLIZED FROM 0.5 M AMMONIUM SUCCINATE, 100 MM TRIS PH 8.3, 2MM BENZOATE THEN SOAKED IN 20MM D-TRP
Crystal Properties Matthews coefficient Solvent content 3.48 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 325.2 α = 90 b = 137.1 β = 90 c = 196.8 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE AREA DETECTOR MARRESEARCH 1996-01-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 20 98.9 0.093 5 4 77977 30
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.1 3.26 98.7 0.236 3 4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION DENSITY AVERAGING PDB ENTRY 1KIF 3.1 20 77977 77977 1000 99 0.236 0.236 0.236 0.2347 0.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_it 6.173 t_angle_deg 3.029 t_nbd 0.118 t_bond_d 0.023 t_gen_planes 0.016 t_trig_c_planes 0.014 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21760 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 574
Software Software Software Name Purpose DM model building TNT refinement DENZO data reduction SCALEPACK data scaling DM phasing