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PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other cryo-EM reconstruction
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.2 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 264.44 α = 90 b = 264.44 β = 90 c = 683.45 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE FUJI MIRRORS 1996-12-19 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 60 35.6 0.11 10 1.5 107965
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.5 3.58 15.2 0.58 1.5 1.14
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT AND NCS SYMMETRY AVERAGING CRYO-EM RECONSTRUCTION 3.6 9 2 93725 35.6 0.271 0.271 0.3006 26.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -11.185 -11.185 22.3701
RMS Deviations Key Refinement Restraint Deviation x_angle_deg 2.9 x_scangle_it 2.5 x_mcangle_it 2.3 x_scbond_it 2 x_mcbond_it 1.7 x_bond_d 0.02 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na
RMS Deviations Key Refinement Restraint Deviation x_angle_deg 2.9 x_scangle_it 2.5 x_mcangle_it 2.3 x_scbond_it 2 x_mcbond_it 1.7 x_bond_d 0.02 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3199 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose GLRF phasing X-PLOR model building X-PLOR refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing