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3-D structure of a HP-RNase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7RSA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 pH 8.50
Crystal Properties Matthews coefficient Solvent content 1.9 34.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.85 α = 90 b = 67.42 β = 90 c = 114.14 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MARRESEARCH MIRRORS 1998-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 19.9 96.6 0.133 0.111 3.3 3.1 25881 17.826
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.69 63.2 0.337 0.255 2.9 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7RSA 1.65 19.9 25108 1973 96.6 0.177 0.185 0.236 RANDOM 21.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 17.7 p_special_tor 15 p_staggered_tor 12.4 p_scangle_it 4.378 p_planar_tor 3.7 p_mcangle_it 3.241 p_scbond_it 3.01 p_mcbond_it 2.333 p_multtor_nbd 0.245 p_singtor_nbd 0.17
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 17.7 p_special_tor 15 p_staggered_tor 12.4 p_scangle_it 4.378 p_planar_tor 3.7 p_mcangle_it 3.241 p_scbond_it 3.01 p_mcbond_it 2.333 p_multtor_nbd 0.245 p_singtor_nbd 0.17 p_chiral_restr 0.115 p_xyhbond_nbd 0.114 p_planar_d 0.028 p_angle_d 0.026 p_plane_restr 0.0219 p_bond_d 0.009 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1909 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing