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Proline 3-hydroxylase (type II) - Iron form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other PROLINE HYDROXYLASE APO FORM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 294 2M AMMONIUM SULFATE, 50MM MES BUFFER, PH6, pH 6.00
Crystal Properties Matthews coefficient Solvent content 2.98 58.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.78 α = 90 b = 72.78 β = 90 c = 224.9 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX7.2 SRS PX7.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 19.7 98.1 0.099 3 2.9 31827 44.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 98.4 0.592 1.1 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PROLINE HYDROXYLASE APO FORM 2.4 23.82 26230 1267 93.8 0.216 0.216 0.219 0.271 0.2762 RANDOM 57.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.6 3.88 6.6 -13.21
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.2 c_scangle_it 4.85 c_mcangle_it 3.72 c_scbond_it 3.57 c_mcbond_it 2.37 c_angle_deg 2.1 c_improper_angle_d 1.29 c_bond_d 0.023 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.2 c_scangle_it 4.85 c_mcangle_it 3.72 c_scbond_it 3.57 c_mcbond_it 2.37 c_angle_deg 2.1 c_improper_angle_d 1.29 c_bond_d 0.023 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4075 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 7
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALA data scaling AMoRE phasing