1G5V
SOLUTION STRUCTURE OF THE TUDOR DOMAIN OF THE HUMAN SMN PROTEIN
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1.0 mM 15N; 20mM phosphate buffer pH 6.3; 30mM NaCl; 5mM DTT | 90% H2O/10% D2O | 20mM Phosphate 30mM NaCl | 6.3 | ambient | 295 | |
2 | 3D_13C-separated_NOESY | 1.0 mM 15N,13C; 20mM phosphate buffer pH 6.3; 30mM NaCl; 5mM DTT | 100% D2O | |||||
3 | HNHA | 1.0 mM 15N; 20mM phosphate buffer pH 6.3; 30mM NaCl; 5mM DTT | 90% H2O/10% D2O | 20mM Phosphate 30mM NaCl | 6.3 | ambient | 295 | |
4 | IPAP (dipolar couplings) | 1.0 mM 15N; 20mM phosphate buffer pH 6.3; 30mM NaCl; 5mM DTT | 90% H2O/10% D2O | 20mM Phosphate 30mM NaCl | 6.3 | ambient | 295 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | DRX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
mixed torsion and Cartesian angle dynamics simulated annealing protocol | 1402 Unambiguous NOE distance restraints 50 Hydrogen bond restraints 44 HN-N dipolar couplings | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum,structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average,lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.6 | bruker |
2 | processing | NMRPipe | Delaglio,F et al. J. Biomol.NMR 6 277-293(1995) | |
3 | data analysis | XEASY | Bartels et al. J.Biomol.NMR 5,1-10(1995) | |
4 | refinement | CNS | 0.3 | bruenger et al. Acta Crystallogr.D Biol. Crystallogr. 54, 905-21 (1998) |