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HUMAN VIMENTIN COIL 1A FRAGMENT (1A)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZTA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 2.0M AMMONIUM ACETATE, 10%(V/V) DIOXANE, 0.1M MES/NA, PH6.5, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.9 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.77 α = 90 b = 56.77 β = 90 c = 58.42 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MIRRORS 1999-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 99.7 0.037 17 10.3 11440
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 99.6 0.56 1.9 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ZTA 1.4 49.39 10979 461 99.7 0.198 0.197 0.2099 0.216 0.2249 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.867 r_scbond_it 5.128 r_mcangle_it 3.323 r_mcbond_it 2.254 r_angle_other_deg 2.034 r_dihedral_angle_3_deg 0.856 r_xyhbond_nbd_other 0.55 r_symmetry_vdw_refined 0.423 r_symmetry_vdw_other 0.419 r_nbd_refined 0.344
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.867 r_scbond_it 5.128 r_mcangle_it 3.323 r_mcbond_it 2.254 r_angle_other_deg 2.034 r_dihedral_angle_3_deg 0.856 r_xyhbond_nbd_other 0.55 r_symmetry_vdw_refined 0.423 r_symmetry_vdw_other 0.419 r_nbd_refined 0.344 r_xyhbond_nbd_refined 0.286 r_nbd_other 0.222 r_symmetry_hbond_refined 0.22 r_chiral_restr 0.116 r_bond_refined_d 0.02 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 328 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing