☰ Navigation Tabs
CONCANAVALIN A, NEW CRYSTAL FORM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JBC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 HANGING DROP, 30MG/ML, 10+10 UL 1 ML WELL, TRIS/HCL PH 8.0, 25%
Crystal Properties Matthews coefficient Solvent content 3.37 63.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.7 α = 90 b = 101.38 β = 90 c = 111.97 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 ADSC AREA DETECTOR COLLIMATOR 0.5 MM 1995-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.564 38.63 77 0.035 16 3.2 73179
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.6 46 0.249 2.1 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1JBC 1.56 38.63 65794 7385 76.9 0.18 0.178 0.1862 0.206 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.798 r_dihedral_angle_1_deg 5.566 r_scangle_it 2.915 r_mcangle_it 1.993 r_scbond_it 1.973 r_angle_other_deg 1.849 r_mcbond_it 1.18 r_symmetry_hbond_refined 0.232 r_symmetry_vdw_refined 0.211 r_nbd_refined 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.798 r_dihedral_angle_1_deg 5.566 r_scangle_it 2.915 r_mcangle_it 1.993 r_scbond_it 1.973 r_angle_other_deg 1.849 r_mcbond_it 1.18 r_symmetry_hbond_refined 0.232 r_symmetry_vdw_refined 0.211 r_nbd_refined 0.21 r_chiral_restr 0.153 r_xyhbond_nbd_refined 0.129 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d r_angle_refined_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3618 Nucleic Acid Atoms Solvent Atoms 688 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement ADSC data reduction DATAMAN data scaling FCALC data scaling EPMR phasing