☰ Navigation Tabs
Feruloyl esterase domain of XynY from clostridium thermocellum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 HEPES PH 7.5 100MM, NA ACETATE 1M, CD ACETATE 50 MM, GLYCEROL 5%
Crystal Properties Matthews coefficient Solvent content 2.95 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.381 α = 90 b = 108.793 β = 90 c = 113.877 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC QUANTUM 4 CYLINDRICAL GRAZING INCIDENCE MIRROR 2000-12-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9754,0.9796 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 99.1 0.055 15 3.9 106584
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 95.1 0.224 3 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 20 101173 5323 99 0.155 0.154 0.1679 0.173 0.1841 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.476 r_dihedral_angle_3_deg 2.801 r_scbond_it 2.337 r_angle_other_deg 1.576 r_mcangle_it 1.511 r_mcbond_it 0.919 r_nbtor_other 0.323 r_symmetry_vdw_refined 0.288 r_symmetry_vdw_other 0.236 r_nbd_refined 0.224
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.476 r_dihedral_angle_3_deg 2.801 r_scbond_it 2.337 r_angle_other_deg 1.576 r_mcangle_it 1.511 r_mcbond_it 0.919 r_nbtor_other 0.323 r_symmetry_vdw_refined 0.288 r_symmetry_vdw_other 0.236 r_nbd_refined 0.224 r_nbd_other 0.197 r_symmetry_hbond_refined 0.179 r_metal_ion_refined 0.173 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.108 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_gen_planes_other 0.006 r_bond_other_d 0.003 r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4574 Nucleic Acid Atoms Solvent Atoms 751 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling TRUNCATE data scaling SOLVE phasing