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Structure of Cellvibrio cellulosa alpha-L-arabinanase complexed with Arabinohexaose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other NATIVE STRUCTURE SOLVED PREVIOUSLY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 10% PEG8000, 100MM TRIS-HCL PH8.0, 20% GLYCEROL, 100MM ARABINOTRIOSE, pH 8.00
Crystal Properties Matthews coefficient Solvent content 2.6 52.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.605 α = 90 b = 90.605 β = 90 c = 177.554 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 100 0.082 30.1 10.47 15610
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 100 0.447 6.1 10.74
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NATIVE STRUCTURE SOLVED PREVIOUSLY 2.5 20 15073 484 100 0.19 0.188 0.1882 0.238 RANDOM 18.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.9 1.45 2.9 -4.36
RMS Deviations Key Refinement Restraint Deviation r_chiral_restr 7.284 r_scangle_it 3.3 r_scbond_it 2.249 r_angle_other_deg 1.763 r_mcangle_it 1.221 r_mcbond_it 0.672 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.179 r_symmetry_vdw_refined 0.155 r_symmetry_hbond_refined 0.15
RMS Deviations Key Refinement Restraint Deviation r_chiral_restr 7.284 r_scangle_it 3.3 r_scbond_it 2.249 r_angle_other_deg 1.763 r_mcangle_it 1.221 r_mcbond_it 0.672 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.179 r_symmetry_vdw_refined 0.155 r_symmetry_hbond_refined 0.15 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2537 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing