☰ Navigation Tabs
Photoproduct of the wild-type Aequorea victoria Green Fluorescent Protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GFL PDB ENTRY 1GFL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 277 CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
Crystal Properties Matthews coefficient Solvent content 2.34 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.77 α = 90 b = 65.67 β = 103.88 c = 110.5 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SAGITALLY FOCUSING GE(220 2000-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 33.15 97.6 0.057 4 1.9 92677 1.5 23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 96.8 0.251 2.7 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GFL 1.8 33.15 92677 4504 97.6 0.209 0.2061 0.267 0.257 RANDOM 32.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 19.4 p_staggered_tor 17.7 p_special_tor 15 p_planar_tor 9.9 p_scangle_it 3.7 p_mcangle_it 2.54 p_scbond_it 2.51 p_mcbond_it 1.88 p_multtor_nbd 0.261 p_singtor_nbd 0.184
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 19.4 p_staggered_tor 17.7 p_special_tor 15 p_planar_tor 9.9 p_scangle_it 3.7 p_mcangle_it 2.54 p_scbond_it 2.51 p_mcbond_it 1.88 p_multtor_nbd 0.261 p_singtor_nbd 0.184 p_xyhbond_nbd 0.165 p_planar_d 0.077 p_angle_d 0.039 p_chiral_restr 0.029 p_bond_d 0.018 p_angle_deg p_hb_or_metal_coord p_plane_restr p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7246 Nucleic Acid Atoms Solvent Atoms 633 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing