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TYPE-2 CU-DEPLETED LACCASE FROM COPRINUS CINEREUS at 1.68 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A65
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 PROTEIN WAS AT 30MG/ML IN 100MM ACETATE BUFFER PH 5.5. CRYSTALS GROW FROM 20-30% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.12 α = 90 b = 84.56 β = 90 c = 139.03 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH LONG FOCUSSING MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 15 96 0.058 0.058 22.2 4.6 61668 18.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.74 91.9 0.275 0.275 10 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1A65 1.68 15 58721 2935 96 0.184 0.1789 0.2075 RANDOM 19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.6 p_staggered_tor 13.3 p_planar_tor 4.2 p_scangle_it 3.54 p_scbond_it 2.716 p_mcangle_it 2.369 p_mcbond_it 1.813 p_multtor_nbd 0.238 p_singtor_nbd 0.184 p_chiral_restr 0.131
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.6 p_staggered_tor 13.3 p_planar_tor 4.2 p_scangle_it 3.54 p_scbond_it 2.716 p_mcangle_it 2.369 p_mcbond_it 1.813 p_multtor_nbd 0.238 p_singtor_nbd 0.184 p_chiral_restr 0.131 p_planar_d 0.033 p_angle_d 0.03 p_plane_restr 0.025 p_bond_d 0.011 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3827 Nucleic Acid Atoms Solvent Atoms 461 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling