1I7V
THE SOLUTION STRUCTURE OF A BAY REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.8 mM oligodeoxynucleotide, 10 mM phosphate buffer, 0.05 mM EDTA, 0.1 M NaCl | 90% H2O/10% D2O | 0.1 M NaCl | 7.0 | 1 atm | 278 | |
2 | 2D NOESY | 1.8 mM oligodeoxynucleotide, 10 mM phosphate buffer, 0.05 mM EDTA, 0.1 M NaCl | 100% D2O | 0.1 M NaCl | 7.0 | 1 atm | 288 | |
3 | DQF-COSY | 1.8 mM oligodeoxynucleotide, 10 mM phosphate buffer, 0.05 mM EDTA, 0.1 M NaCl | 100% D2O | 0.1 M NaCl | 7.0 | 1 atm | 288 | |
4 | TOCSY | 1.8 mM oligodeoxynucleotide, 10 mM phosphate buffer, 0.05 mM EDTA, 0.1 M NaCl | 100% D2O | 0.1 M NaCl | 7.0 | 1 atm | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 500 |
2 | Bruker | DMX | 750 |
NMR Refinement | ||
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Method | Details | Software |
NOE-restrained molecular dynamics/simulated annealing | The structure was based on a total of 485 NOE derived distance constraints. | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum |
Conformers Calculated Total Number | 1 |
Conformers Submitted Total Number | 1 |
Additional NMR Experimental Information | |
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Details | This structure was determined using 2D homonuclear techniques |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.0 | Bruker |
2 | structure solution | X-PLOR | 3.851 | A. Brunger |
3 | processing | Felix | 97.0 | Biosym Technologies |
4 | refinement | CORMA | 5.2 | Borgias, B.A., Thomas, P.D., Li, H., Kumar, A., and Tonelli, M. |
5 | iterative matrix relaxation | MARDIGRAS | 3.0 | Borgias, B.A., Thomas, P.D., Li, H., Kumar, A., and Tonelli, M. |