☰ Navigation Tabs
HISTOCOMPATIBILITY ANTIGEN I-AK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IEA PDB ENTRY 1IEA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.75 20% PEG 4000, 7% EG, 80MM A.S, 200MM AMM.ACETATE, 50MM NA.ACETATE PH 4.75
Crystal Properties Matthews coefficient Solvent content 3.4 63.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.25 α = 90 b = 112.25 β = 90 c = 99.72 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE FUJI
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 95.7 0.05 11.7 4.12 48139 25.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.99 96.6 0.27 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1IEA 1.9 10 47865 2410 95.7 0.214 0.214 0.263 RANDOM 30.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.22 -4.22 8.43
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 25.1 x_scangle_it 2.67 x_mcangle_it 2.53 x_angle_deg 2 x_scbond_it 1.65 x_mcbond_it 1.47 x_improper_angle_d 1.18 x_bond_d 0.009 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 25.1 x_scangle_it 2.67 x_mcangle_it 2.53 x_angle_deg 2 x_scbond_it 1.65 x_mcbond_it 1.47 x_improper_angle_d 1.18 x_bond_d 0.009 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3129 Nucleic Acid Atoms Solvent Atoms 369 Heterogen Atoms 42
Software Software Software Name Purpose HKL data collection DENZO data reduction SCALA data scaling Agrovata data reduction X-PLOR model building X-PLOR refinement HKL data reduction CCP4 data scaling X-PLOR phasing