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HISTOCOMPATIBILITY ANTIGEN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DLH PDB ENTRY 1DLH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.2 8% PEG 4000, 2% EG, 200MM A.S, 100MM CITRATE PH 5.2
Crystal Properties Matthews coefficient Solvent content 2.54 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.02 α = 90 b = 57.09 β = 91.52 c = 117.01 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE FUJI
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.9879, 1.0070 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 89.2 0.075 4.35 38809 34.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1DLH 2.3 6 36317 1833 88.7 0.202 0.202 0.274 RANDOM 32.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.37 -2.27 5.65 -1.28
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.7 x_mcangle_it 2.62 x_scangle_it 2.47 x_angle_deg 1.63 x_mcbond_it 1.54 x_scbond_it 1.53 x_improper_angle_d 1.39 x_bond_d 0.01 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.7 x_mcangle_it 2.62 x_scangle_it 2.47 x_angle_deg 1.63 x_mcbond_it 1.54 x_scbond_it 1.53 x_improper_angle_d 1.39 x_bond_d 0.01 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6336 Nucleic Acid Atoms Solvent Atoms 349 Heterogen Atoms 84
Software Software Software Name Purpose HKL data collection DENZO data reduction SCALA data scaling Agrovata data reduction X-PLOR model building X-PLOR refinement HKL data reduction CCP4 data scaling X-PLOR phasing