☰ Navigation Tabs
The structure of TT1380 protein from thermus thermophilus
Crystallization Crystal Properties Matthews coefficient Solvent content 1.65 25.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.82 α = 90 b = 51.998 β = 124.25 c = 62.186 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-09-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44B2 SPring-8 BL44B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 96.4 0.078 35.06 4.29 27602
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 89.8 0.177 3.22
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 19.07 26208 1348 100 0.23484 0.23335 0.2343 0.26408 0.2641 RANDOM 22.275
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 0.05 0.42 -0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.224 r_scangle_it 4.409 r_scbond_it 2.767 r_mcangle_it 1.782 r_angle_refined_deg 1.494 r_mcbond_it 0.989 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.188 r_xyhbond_nbd_refined 0.143 r_symmetry_hbond_refined 0.117
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.224 r_scangle_it 4.409 r_scbond_it 2.767 r_mcangle_it 1.782 r_angle_refined_deg 1.494 r_mcbond_it 0.989 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.188 r_xyhbond_nbd_refined 0.143 r_symmetry_hbond_refined 0.117 r_chiral_restr 0.106 r_metal_ion_refined 0.088 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1678 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 7
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling REFMAC refinement HKL-2000 data reduction