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Sperm Whale met-Myoglobin (room temperature; room pressure)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VXH PDB ENTRY 1VXH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 batch 6 298 ammonium sulfate, pH 6, batch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.93 36.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.45 α = 90 b = 30.93 β = 105.73 c = 34.73 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 AREA DETECTOR UCSD MARK II 1997-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.541
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 9.2 96.9 0.044 14.7 2.6 5870 5870 20.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 94.5 0.056 15.6 2 825
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT PDB ENTRY 1VXH 2.3 9.18 2 5811 633 97.7 0.162 0.1583 0.218 0.2154 RANDOM 16.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 -0.78 1.97 -1.44
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 17.2 c_scangle_it 3.39 c_scbond_it 2.23 c_mcangle_it 1.87 c_mcbond_it 1.22 c_improper_angle_d 1.02 c_angle_deg 1 c_bond_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1212 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms 53
Software Software Software Name Purpose CNS refinement CCP4 data scaling CNS phasing