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Full Matrix Error Analysis of Streptavidin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DF8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 293 ammonium sulfate, sodium acetate, biotin, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.89 41.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.027 α = 90 b = 93.54 β = 90 c = 104.17 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1999-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.96 14 96.4 0.065 8.9 135985 135985
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.96 0.97 45 0.602
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R 1DF8 0.96 14 135984 135984 5439 96.4 0.1386 0.1645 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 14 1667.5 2128
RMS Deviations Key Refinement Restraint Deviation s_anti_bump_dis_restr 0.122 s_non_zero_chiral_vol 0.105 s_approx_iso_adps 0.09 s_zero_chiral_vol 0.083 s_similar_adp_cmpnt 0.046 s_angle_d 0.036 s_from_restr_planes 0.0337 s_bond_d 0.019 s_rigid_bond_adp_cmpnt 0.007 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1787 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 46
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXS phasing SHELXL-97 refinement