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Transition state structure of arginine kinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BGO PDB ENTRY 1BGO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 pH 8
Crystal Properties Matthews coefficient Solvent content 1.98 46.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.393 α = 90 b = 70.312 β = 90 c = 80.319 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 1999-04-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 20 96.2 0.048 24 115910
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.23 71.5 0.323 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BGO 1.2 6 102470 6 90 0.1248 0.127 0.1248 0.1395 0.2032 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 8 2820 3422
RMS Deviations Key Refinement Restraint Deviation s_zero_chiral_vol 0.249 s_anti_bump_dis_restr 0.226 s_non_zero_chiral_vol 0.119 s_approx_iso_adps 0.098 s_similar_adp_cmpnt 0.047 s_from_restr_planes 0.0303 s_angle_d 0.026 s_bond_d 0.01 s_rigid_bond_adp_cmpnt 0.005 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2854 Nucleic Acid Atoms Solvent Atoms 557 Heterogen Atoms 48
Software Software Software Name Purpose SHELXL-97 refinement SCALEPACK data scaling XDISPLAYF) data collection CNS refinement SHELX model building DENZO data reduction XDISPLAYF) data reduction CNS phasing SHELX phasing