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CRYSTAL STRUCTURE OF O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS KODAKARAENSIS STRAIN KOD1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 HANGING DROP VAPOR DIFFUSION, pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.34 47.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.23 α = 90 b = 86.22 β = 90 c = 39.83 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 290 DIFFRACTOMETER WEISSENBERG MIRRORS 1997-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B Photon Factory BL-18B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 92.4 0.065 10.9 6.4 17669 1 16.96
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 76.8 0.16
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS 1.8 20 17597 825 98.4 0.173 0.171 0.1604 0.218 RANDOM 21.23
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 24.4 p_staggered_tor 15.4 p_special_tor 15 p_scangle_it 3.751 p_scbond_it 2.4 p_mcangle_it 2.08 p_planar_tor 1.7 p_mcbond_it 1.548 p_planar_d 0.029 p_angle_d 0.023
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 24.4 p_staggered_tor 15.4 p_special_tor 15 p_scangle_it 3.751 p_scbond_it 2.4 p_mcangle_it 2.08 p_planar_tor 1.7 p_mcbond_it 1.548 p_planar_d 0.029 p_angle_d 0.023 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_plane_restr p_chiral_restr p_singtor_nbd p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1333 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 15
Software Software Software Name Purpose CCP4 model building REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing