1MXF
Crystal Structure of Inhibitor Complex of Putative Pteridine Reductase 2 (PTR2) from Trypanosoma cruzi
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | 6.3 | 293 | Sodium acetate, cacodylate buffer, pH 6.30, temperature 293K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.3 | 46.7 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 74.79 | α = 90 |
b = 74.79 | β = 90 |
c = 180.99 | γ = 120 |
Symmetry | |
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Space Group | P 31 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 103 | CCD | MARRESEARCH | MIRRORS | 2000-12-20 | M | MAD |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | APS BEAMLINE 17-ID | 0.9537, 0.9791, 0.9792 | APS | 17-ID |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 1.76 | 36 | 80 | 0.037 | 11.8 | 5.1 | 89619 | 22.6 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Cut-off Sigma (F) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | R-Free Selection Details | Mean Isotropic B | |||
X-RAY DIFFRACTION | MAD | THROUGHOUT | 2.3 | 19.49 | 1 | 48788 | 47319 | 2526 | 94.2 | 0.197 | 0.197 | 0.1983 | 0.239 | 0.2406 | RANDOM | 36.1 |
Temperature Factor Modeling | ||||||
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[2][2] | Anisotropic B[3][3] | |||
3.28 | 4.53 | 3.28 | -6.56 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
c_dihedral_angle_d | 23.5 |
c_scangle_it | 3.38 |
c_scbond_it | 2.26 |
c_mcangle_it | 2.11 |
c_angle_deg | 1.3 |
c_mcbond_it | 1.3 |
c_improper_angle_d | 0.91 |
c_bond_d | 0.006 |
c_bond_d_na | |
c_bond_d_prot |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 7348 |
Nucleic Acid Atoms | |
Solvent Atoms | 346 |
Heterogen Atoms | 324 |
Software
Software | |
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Software Name | Purpose |
HKL-2000 | data collection |
X-GEN | data reduction |
SOLVE | phasing |
CNS | refinement |
HKL-2000 | data reduction |
X-GEN | data scaling |