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Horse Liver Alcohol Dehydrogenase Val292Thr Mutant Complexed to NAD+ and Pyrazole
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HLD PDB ENTRY 1HLD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 277 MPD, pH 7.0, dialysis, temperature 277K, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.13 41.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.31 α = 91.94 b = 51.38 β = 102.97 c = 92.67 γ = 109.93
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.13 20 0.058 32 2.2 218390
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.13 1.16 46.2 0.172 0.172 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HLD 1.13 20 277740 218390 7813 81.52 0.14456 0.14375 0.1464 0.16739 0.171 RANDOM 18.194
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.39 0.39 0.94 0.04 -1.06
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 7.728 r_sphericity_free 6.172 r_dihedral_angle_1_deg 6.037 r_scangle_it 5.376 r_scbond_it 3.593 r_mcangle_it 2.62 r_mcbond_it 1.75 r_angle_refined_deg 1.699 r_rigid_bond_restr 1.539 r_nbd_other 0.305
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 7.728 r_sphericity_free 6.172 r_dihedral_angle_1_deg 6.037 r_scangle_it 5.376 r_scbond_it 3.593 r_mcangle_it 2.62 r_mcbond_it 1.75 r_angle_refined_deg 1.699 r_rigid_bond_restr 1.539 r_nbd_other 0.305 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.183 r_symmetry_hbond_refined 0.154 r_nbtor_other 0.126 r_chiral_restr 0.109 r_bond_refined_d 0.015 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5605 Nucleic Acid Atoms Solvent Atoms 717 Heterogen Atoms 102
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement