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NAPHTHALENE 1,2-DIOXYGENASE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.97 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105 α = 90 b = 174 β = 90 c = 282.5 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 1997-11-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 30 95.5 0.091 14.66 6.2 117067 29.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.29 96.9 0.386 3.6 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR AND MAD THROUGHOUT 2.25 30 122414 79 0.22 0.19 0.1842 0.24 RANDOM 34.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4 -6.3 2.3
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 26.6 p_staggered_tor 18.2 p_planar_tor 9.6 p_scangle_it 7.9 p_scbond_it 6.5 p_mcangle_it 3.7 p_mcbond_it 2.7 p_multtor_nbd 0.25 p_xyhbond_nbd 0.21 p_singtor_nbd 0.19
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 26.6 p_staggered_tor 18.2 p_planar_tor 9.6 p_scangle_it 7.9 p_scbond_it 6.5 p_mcangle_it 3.7 p_mcbond_it 2.7 p_multtor_nbd 0.25 p_xyhbond_nbd 0.21 p_singtor_nbd 0.19 p_chiral_restr 0.16 p_planar_d 0.06 p_angle_d 0.04 p_plane_restr 0.04 p_bond_d 0.02 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15270 Nucleic Acid Atoms Solvent Atoms 2040 Heterogen Atoms 15
Software Software Software Name Purpose SHARP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling