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BOVINE PROTHROMBIN FRAGMENT 1 IN COMPLEX WITH CALCIUM ION
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2PF2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.6 pH 7.6
Crystal Properties Matthews coefficient Solvent content 3.95 68.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.188 α = 90 b = 53.443 β = 90 c = 128.173 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C 1.0 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 32 98.3 0.077 18.5 7 21658 -3 18.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 96.3 0.379 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2pf2 1.9 31.6 20891 2058 95 0.222 0.219 0.219 0.253 RANDOM 29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.77 -1.81 -2.95
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.9 c_improper_angle_d 3.19 c_angle_deg 2.2 c_scangle_it 2 c_mcangle_it 1.49 c_scbond_it 1.22 c_mcbond_it 0.87 c_bond_d 0.019 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.9 c_improper_angle_d 3.19 c_angle_deg 2.2 c_scangle_it 2 c_mcangle_it 1.49 c_scbond_it 1.22 c_mcbond_it 0.87 c_bond_d 0.019 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1182 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms 49
Software Software Software Name Purpose CNS refinement AMoRE phasing