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Structure of shikimate 5-dehydrogenase-like protein HI0607
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 NaCl, NaAcetate, PEG400, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.3 46.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.578 α = 90 b = 66.575 β = 109.56 c = 96.916 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 2002-07-02 M MAD 2 1 100 CCD SBC-2 2002-02-13
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97921, 0.97935 APS 19-ID 2 SYNCHROTRON APS BEAMLINE 19-ID 0.97892 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 98.5 0.059 18 4 109795 108148 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.81 88 0.36 1.9 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.75 30 102713 5397 98.41 0.1813 0.17934 0.21908 0.2207 RANDOM 16.535
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.42 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.073 r_scangle_it 5.327 r_scbond_it 3.221 r_mcangle_it 1.877 r_angle_refined_deg 1.662 r_mcbond_it 1.056 r_angle_other_deg 0.884 r_symmetry_vdw_other 0.296 r_nbd_other 0.251 r_symmetry_vdw_refined 0.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.073 r_scangle_it 5.327 r_scbond_it 3.221 r_mcangle_it 1.877 r_angle_refined_deg 1.662 r_mcbond_it 1.056 r_angle_other_deg 0.884 r_symmetry_vdw_other 0.296 r_nbd_other 0.251 r_symmetry_vdw_refined 0.242 r_nbd_refined 0.233 r_xyhbond_nbd_refined 0.174 r_symmetry_hbond_refined 0.144 r_chiral_restr 0.105 r_nbtor_other 0.086 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8363 Nucleic Acid Atoms Solvent Atoms 1149 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing ARP/wARP model building