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Crystal Structure of Cimex Nitrophorin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 298 PEG 4000, pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.99 37.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.2 α = 90 b = 42.1 β = 95.88 c = 65.85 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV osmic mirrors 2002-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 21 98.5 0.064 11 3.6 25024 24988 19.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.85 96.5 0.31 2.4 3.6 1859
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 21 23852 23852 1214 99.66 0.1532 0.15323 0.151 0.19788 RANDOM 22.693
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 -0.94 0.03 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.88 r_scangle_it 5.703 r_scbond_it 3.585 r_mcangle_it 2.528 r_angle_refined_deg 1.968 r_mcbond_it 1.366 r_angle_other_deg 0.945 r_symmetry_hbond_refined 0.376 r_nbd_other 0.247 r_symmetry_vdw_other 0.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.88 r_scangle_it 5.703 r_scbond_it 3.585 r_mcangle_it 2.528 r_angle_refined_deg 1.968 r_mcbond_it 1.366 r_angle_other_deg 0.945 r_symmetry_hbond_refined 0.376 r_nbd_other 0.247 r_symmetry_vdw_other 0.212 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.171 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.122 r_nbtor_other 0.09 r_bond_refined_d 0.024 r_gen_planes_refined 0.011 r_gen_planes_other 0.009 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2227 Nucleic Acid Atoms Solvent Atoms 163 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction d*TREK data scaling MLPHARE phasing