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Ptp1B R47C Modified at C47 with N-[4-(2-{2-[3-(2-Bromo-acetylamino)-propionylamino]-3-hydroxy-propionylamino}-ethyl)-phenyl]-oxalamic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other native PTP-1B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 298 PEG 8k, HEPES, MgOAc, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.93 68.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.052 α = 90 b = 88.052 β = 90 c = 117.594 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE RIGAKU RAXIS IV mirrors 2002-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 15 94.2 0.187 0.187 5.8 2 9867 9867 47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.1 3.21 94 0.397 0.397 2.6 2 964
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT native PTP-1B 3.1 15 8660 8660 447 92.3 0.284 0.28401 0.28295 0.2647 0.30544 0.2872 RANDOM 2.352
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.6 -1.3 -2.6 3.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.571 r_angle_refined_deg 0.954 r_scangle_it 0.624 r_mcangle_it 0.496 r_scbond_it 0.446 r_mcbond_it 0.36 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.116 r_chiral_restr 0.059
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.571 r_angle_refined_deg 0.954 r_scangle_it 0.624 r_mcangle_it 0.496 r_scbond_it 0.446 r_mcbond_it 0.36 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.116 r_chiral_restr 0.059 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2362 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement d*TREK data scaling