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Deoxy hemoglobin (A-GLY-C:V1M; B,D:V1M,C93A,N108K)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C7C PDB ENTRY 1C7C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.50
Crystal Properties Matthews coefficient Solvent content 1.84 33.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.031 α = 90 b = 83.119 β = 99.04 c = 53.873 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 IMAGE PLATE RIGAKU RAXIS IIC COLLIMATOR 1999-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 94.3 0.051 14.3 2.8 47944
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 90.9 0.293 3.82 2.75
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1C7C 1.8 8 47360 2291 94.3 0.19 0.188 0.1718 0.245 0.1833 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 4806
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.054 s_non_zero_chiral_vol 0.04 s_zero_chiral_vol 0.039 s_from_restr_planes 0.022 s_similar_dist 0.021 s_angle_d 0.015 s_bond_d 0.005 s_anti_bump_dis_restr 0.005 s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4390 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms 172
Software Software Software Name Purpose XDS data scaling XSCALE data scaling SHELX model building SHELXL-97 refinement XDS data reduction SHELX phasing