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Crystal structure of Thymidylate Synthase Complementing Protein (TM0449) from Thermotoga maritima with FAD and dUMP at 1.6 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KQ4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 50% PEG 200, 0.1M Tris-HCL, pH 8.0, VAPOR DIFFUSION,HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.09 40.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.561 α = 90 b = 117.73 β = 90 c = 141.878 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Flat mirror, single crystal Si(111) bent monochromator 2002-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50.247 98.9 0.071 15.3 4.3 121887 121887 23.189
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.64 91.5 0.539 1.7 2.7 8240
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT 1KQ4 1.6 20 2 121811 120909 6098 98.1 0.2032 0.2047 0.2182 0.2206 34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.841 0.167 4.674
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.002 c_scbond_it 1.923 c_mcangle_it 1.879 c_angle_deg 1.36 c_mcbond_it 1.2 c_bond_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7330 Nucleic Acid Atoms Solvent Atoms 268 Heterogen Atoms 342
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling RESOLVE model building SOLVE phasing CNS refinement CCP4 data scaling RESOLVE phasing