☰ Navigation Tabs
Crystal structure of human GGA1 GAT domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 MPD, PEG6000, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.96 58.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.11 α = 90 b = 85.11 β = 90 c = 59.001 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-10-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 0.9500, 0.9806, 0.9808, 1.0 Photon Factory BL-18B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 100 0.045 9.2 9302 9301
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.21 99.6 0.267 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 30 9301 8858 443 100 0.2468 0.2468 0.24477 0.2478 0.28951 0.3058 RANDOM 46.589
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.04 0.09 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.844 r_scangle_it 5.374 r_dihedral_angle_1_deg 3.426 r_scbond_it 3.127 r_mcangle_it 2.128 r_angle_refined_deg 1.727 r_mcbond_it 1.159 r_nbd_refined 0.281 r_xyhbond_nbd_refined 0.274 r_symmetry_vdw_refined 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.844 r_scangle_it 5.374 r_dihedral_angle_1_deg 3.426 r_scbond_it 3.127 r_mcangle_it 2.128 r_angle_refined_deg 1.727 r_mcbond_it 1.159 r_nbd_refined 0.281 r_xyhbond_nbd_refined 0.274 r_symmetry_vdw_refined 0.27 r_symmetry_hbond_refined 0.244 r_chiral_restr 0.126 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 886 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing RESOLVE model building REFMAC refinement CCP4 data scaling RESOLVE phasing