X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1521% PEG 8K, 0.1M NA CACODYLATE, 0.2M NA ACETATE PH5.5, pH 5.00
Crystal Properties
Matthews coefficientSolvent content
1.570

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.917α = 90
b = 78.882β = 90
c = 169.036γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMIRRORS2000-11-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2535.899.60.06713.7269422

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1ANQ2.2333.714957226661000.2050.241RANDOM52.44
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.350.23-0.58
RMS Deviations
KeyRefinement Restraint Deviation
r_chiral_restr7.464
r_scangle_it7.136
r_scbond_it5.024
r_angle_other_deg3.995
r_mcangle_it3.535
r_mcbond_it2.172
r_dihedral_angle_3_deg2.142
r_nbd_refined0.632
r_symmetry_vdw_other0.379
r_nbd_other0.37
RMS Deviations
KeyRefinement Restraint Deviation
r_chiral_restr7.464
r_scangle_it7.136
r_scbond_it5.024
r_angle_other_deg3.995
r_mcangle_it3.535
r_mcbond_it2.172
r_dihedral_angle_3_deg2.142
r_nbd_refined0.632
r_symmetry_vdw_other0.379
r_nbd_other0.37
r_symmetry_hbond_refined0.308
r_xyhbond_nbd_refined0.243
r_symmetry_vdw_refined0.23
r_bond_refined_d0.207
r_nbtor_other0.12
r_bond_other_d0.092
r_gen_planes_refined0.022
r_gen_planes_other0.016
r_angle_refined_deg
r_dihedral_angle_1_deg
r_dihedral_angle_2_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6482
Nucleic Acid Atoms
Solvent Atoms352
Heterogen Atoms216

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing