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Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.9 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.681 α = 90 b = 85.936 β = 118.36 c = 79.126 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2001-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.9 0.087 4.7 3.7 48465
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 100 0.28 1.3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2 67.42 46033 2451 100 0.179 0.177 0.1858 0.216 0.2239 RANDOM 21.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.02 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.982 r_scangle_it 3.251 r_scbond_it 1.94 r_mcangle_it 1.371 r_angle_refined_deg 1.303 r_angle_other_deg 1.144 r_mcbond_it 0.701 r_symmetry_vdw_other 0.265 r_nbd_other 0.23 r_nbd_refined 0.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.982 r_scangle_it 3.251 r_scbond_it 1.94 r_mcangle_it 1.371 r_angle_refined_deg 1.303 r_angle_other_deg 1.144 r_mcbond_it 0.701 r_symmetry_vdw_other 0.265 r_nbd_other 0.23 r_nbd_refined 0.195 r_xyhbond_nbd_refined 0.164 r_symmetry_hbond_refined 0.146 r_symmetry_vdw_refined 0.118 r_nbtor_other 0.082 r_chiral_restr 0.07 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3878 Nucleic Acid Atoms 478 Solvent Atoms 673 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE/RESOLVE phasing