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P6.1 stem loop from the activation domain of hTR
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 0.8 mM RNA, 10 mM Sodium Phosphate D20 10 mM Na 6 300 2 2D TOCSY 0.8 mM RNA, 10 mM Sodium Phosphate D20 10 mM Na 6 300 3 3D_13C-separated_NOESY 0.8 mM RNA, 10 mM Sodium Phosphate D20 10 mM Na 6 300 4 DQF-COSY 0.8 mM RNA, 10 mM Sodium Phosphate D20 10 mM Na 6 300 5 HCCH-COSY 0.8 mM RNA, 10 mM Sodium Phosphate D20 10 mM Na 6 300 6 2D NOESY 0.8 mM RNA, 10 mM Sodium Phosphate 95% H20, 5% D20 10 mM Na 6 277
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 500 2 Bruker DMX 750 3 Bruker DRX 800
NMR Refinement Method Details Software Torsion angle molecular dynamics with
simulated anealing in CNS version 5 CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CNS 5 2 collection XwinNMR 3.X 3 processing NMRPipe 4 data analysis Sparky 3.91 5 refinement CNS 5