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Crystal structure of Formyl-CoA Transferase (apoenzyme) from Oxalobacter formigenes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PEG 4000, Magnesium cloride, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.01 59.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.44 α = 90 b = 151.44 β = 90 c = 99.49 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 4 2001-12-09 M SINGLE WAVELENGTH 2 1 x-ray 110 CCD MAR CCD 165 mm Premirror, double crystal focussing monochromator, bent mirror 2002-06-08 M SAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.933 ESRF ID14-1 2 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9790 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.2 25 0.098 15.3 5.1 53823 53823
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.2 2.32 99 0.236 4.9 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 24.62 53823 53823 2870 100 0.17295 0.17108 0.1768 0.20902 0.2116 RANDOM 30.915
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.093 r_scangle_it 3 r_scbond_it 1.822 r_mcangle_it 1.349 r_angle_refined_deg 1.297 r_angle_other_deg 0.829 r_mcbond_it 0.719 r_nbd_other 0.232 r_nbd_refined 0.192 r_symmetry_hbond_refined 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.093 r_scangle_it 3 r_scbond_it 1.822 r_mcangle_it 1.349 r_angle_refined_deg 1.297 r_angle_other_deg 0.829 r_mcbond_it 0.719 r_nbd_other 0.232 r_nbd_refined 0.192 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.176 r_symmetry_vdw_other 0.165 r_nbtor_other 0.086 r_chiral_restr 0.083 r_symmetry_vdw_refined 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6624 Nucleic Acid Atoms Solvent Atoms 530 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing