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Structure of human dCK complexed with cytarabine and ADP-MG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 298 20%(w/v)PEG1K, 100mM magnesium acetate, 100mM TRIS, 5mM araC, 5mM ADP, 5mM MgCl2, 5mM DTT, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.49 50.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.72 α = 90 b = 80.72 β = 90 c = 94.28 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 4 2002-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 0.052 23.1 11.8 41303 25
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.7 0.511 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 20 37175 4127 99.04 0.1754 0.17298 0.1844 0.19694 0.2063 RANDOM 25.373
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.08 1.08 -2.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.204 r_scangle_it 4.641 r_scbond_it 2.854 r_mcangle_it 2.088 r_angle_refined_deg 1.77 r_mcbond_it 1.151 r_angle_other_deg 0.929 r_symmetry_vdw_other 0.309 r_nbd_other 0.245 r_nbd_refined 0.217
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.204 r_scangle_it 4.641 r_scbond_it 2.854 r_mcangle_it 2.088 r_angle_refined_deg 1.77 r_mcbond_it 1.151 r_angle_other_deg 0.929 r_symmetry_vdw_other 0.309 r_nbd_other 0.245 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.158 r_symmetry_hbond_refined 0.152 r_chiral_restr 0.109 r_nbtor_other 0.083 r_symmetry_vdw_refined 0.075 r_bond_refined_d 0.018 r_gen_planes_other 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1902 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement XDS data scaling SOLVE phasing