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Structure of a c-Kit Kinase Product Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.1 295 PEG, pH 7.1, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.16 42.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.667 α = 90 b = 116.458 β = 90 c = 60.066 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2003-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 30 14652
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 10 13437 709 97.1 0.22874 0.22874 0.22451 0.31129 RANDOM 16.956
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.65 2.5 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.465 r_scangle_it 2.356 r_angle_refined_deg 1.61 r_scbond_it 1.398 r_mcangle_it 0.88 r_mcbond_it 0.449 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.238 r_symmetry_hbond_refined 0.231 r_xyhbond_nbd_refined 0.185
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.465 r_scangle_it 2.356 r_angle_refined_deg 1.61 r_scbond_it 1.398 r_mcangle_it 0.88 r_mcbond_it 0.449 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.238 r_symmetry_hbond_refined 0.231 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.109 r_bond_refined_d 0.014 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4560 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing