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STRUCTURE OF THE PANTON-VALENTINE LEUCOCIDIN F COMPONENT FROM STAPHYLOCOCCUS AUREUS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 pH 6.8
Crystal Properties Matthews coefficient Solvent content 2.65 53.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.74 α = 90 b = 72.38 β = 90 c = 98.93 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH COLLIMATOR 1997-10-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 0.8270, 1.1271 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 24.4 85 0.032 0.06 8 4.6 21089 3 10.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.12 88 0.088 0.101 7.2 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 24.4 21049 1080 85 0.2012 0.2586 0.243 0.2905 RANDOM 15.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.9 p_staggered_tor 10.9 p_special_tor 5 p_scangle_it 2.656 p_scbond_it 1.688 p_planar_tor 1.4 p_mcangle_it 1.024 p_mcbond_it 0.844 p_xhyhbond_nbd 0.3 p_multtor_nbd 0.242
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.9 p_staggered_tor 10.9 p_special_tor 5 p_scangle_it 2.656 p_scbond_it 1.688 p_planar_tor 1.4 p_mcangle_it 1.024 p_mcbond_it 0.844 p_xhyhbond_nbd 0.3 p_multtor_nbd 0.242 p_singtor_nbd 0.188 p_xyhbond_nbd 0.163 p_chiral_restr 0.155 p_hb_or_metal_coord 0.05 p_planar_d 0.028 p_angle_d 0.027 p_bond_d 0.012 p_plane_restr 0.0098 p_angle_deg p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2401 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 24
Software Software Software Name Purpose SHARP phasing REFMAC refinement DENZO data reduction CCP4 data scaling