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Crystal structure of Fibroblast Growth Factor 19
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JQZ PDB ENTRIES 1JQZ, 2FGF, 1IJT, 1QQK, 1IHK experimental model PDB 2FGF PDB ENTRIES 1JQZ, 2FGF, 1IJT, 1QQK, 1IHK experimental model PDB 1IJT PDB ENTRIES 1JQZ, 2FGF, 1IJT, 1QQK, 1IHK experimental model PDB 1QQK PDB ENTRIES 1JQZ, 2FGF, 1IJT, 1QQK, 1IHK experimental model PDB 1IHK PDB ENTRIES 1JQZ, 2FGF, 1IJT, 1QQK, 1IHK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 PEG 3350, potassium phosphate, magnesium sulphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.34 47.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.573 α = 90 b = 67.573 β = 90 c = 193.374 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2003-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.975 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 25 99.9 0.062 36.5 12.08 42313 13.695
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 100 0.586 4.32 11.3 2080
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1JQZ, 2FGF, 1IJT, 1QQK, 1IHK 1.3 23.33 42303 2058 99.75 0.1807 0.1807 0.1798 0.1826 0.1954 RANDOM 14.373
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 -0.17 -0.34 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.524 r_sphericity_free 4.108 r_scangle_it 3.55 r_sphericity_bonded 2.954 r_scbond_it 2.258 r_mcangle_it 1.97 r_angle_refined_deg 1.437 r_rigid_bond_restr 1.291 r_mcbond_it 1.244 r_angle_other_deg 1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.524 r_sphericity_free 4.108 r_scangle_it 3.55 r_sphericity_bonded 2.954 r_scbond_it 2.258 r_mcangle_it 1.97 r_angle_refined_deg 1.437 r_rigid_bond_restr 1.291 r_mcbond_it 1.244 r_angle_other_deg 1.05 r_symmetry_vdw_other 0.347 r_symmetry_vdw_refined 0.344 r_symmetry_hbond_refined 0.293 r_nbd_other 0.278 r_xyhbond_nbd_refined 0.266 r_nbd_refined 0.23 r_chiral_restr 0.099 r_nbtor_other 0.084 r_bond_refined_d 0.01 r_gen_planes_other 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 950 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing