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Crystal structure analysis of the Candida albicans Mtr2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q40 PDB ENTRY 1Q40
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 293 NaH2PO4/K2HPO4, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.75 54.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.489 α = 90 b = 54.308 β = 99.02 c = 61.285 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 25 94.8 0.056 4.7 2.3 19385
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.8 84 0.36 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Q40 1.75 12 18343 994 94.37 0.22518 0.22355 0.2125 0.25434 0.2471 RANDOM 22.442
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.69 1.47 -0.47 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.369 r_scangle_it 3.272 r_scbond_it 1.962 r_mcangle_it 1.708 r_angle_refined_deg 1.267 r_mcbond_it 0.907 r_angle_other_deg 0.77 r_nbd_other 0.225 r_nbd_refined 0.198 r_symmetry_vdw_other 0.174
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.369 r_scangle_it 3.272 r_scbond_it 1.962 r_mcangle_it 1.708 r_angle_refined_deg 1.267 r_mcbond_it 0.907 r_angle_other_deg 0.77 r_nbd_other 0.225 r_nbd_refined 0.198 r_symmetry_vdw_other 0.174 r_symmetry_vdw_refined 0.106 r_chiral_restr 0.086 r_nbtor_other 0.082 r_xyhbond_nbd_refined 0.082 r_symmetry_hbond_refined 0.038 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1271 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling