1Q71
The structure of microcin J25 is a threaded sidechain-to-backbone ring structure and not a head-to-tail cyclized backbone
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D TOCSY | 0.3 mg of microcin J25 | 100% CD3OH | 0 | ambient | 298 | ||
2 | 2D NOESY | 0.3 mg of microcin J25 | 100% CD3OH | 0 | ambient | 298 | ||
3 | E-COSY | 0.3 mg of microcin J25 | 100% CD3OH | 0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 750 |
2 | Bruker | Avance | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
Structures were calculated by torsion angle dynamics and refined in a water shell using Cartesian dynamics within CNS. | Preliminary structures were generated by torsion angle dynamics using CNS. Structures were subsequently subjected to further molecular dynamics and energy minimisation in a water shell using protocols from ARIA within CNS. | XWINNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
---|---|
Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XWINNMR | 3.1 | Bruker |
2 | data analysis | XEASY | 1.3.7 | Eccles, C., Guntert, P., Billeter, M. and Wuthrich, K. |
3 | structure solution | DYANA | 1.5 | Guntert, P., Mumenthaler, C. and Wuthrich, K. |
4 | refinement | CNS | 1.0 | Brunger, A.T. et al. |