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Crystal structure of 7,8-diaminopelargonic acid synthase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.7 pH 6.70
Crystal Properties Matthews coefficient Solvent content 2.2 30
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.338 α = 90 b = 55.556 β = 96.97 c = 120.884 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1996-10-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.8265, 0.9082, 0.9918, 1.007 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 94.4 0.068 14 2.2 149599 17.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 81.3 0.305 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 20 67496 94.4 0.175 0.226 RANDOM 21.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 16.4 p_special_tor 15 p_scangle_it 5.294 p_scbond_it 4.164 p_planar_tor 3.5 p_mcangle_it 2.407 p_mcbond_it 1.838 p_multtor_nbd 0.26 p_singtor_nbd 0.175 p_planar_d 0.031
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 16.4 p_special_tor 15 p_scangle_it 5.294 p_scbond_it 4.164 p_planar_tor 3.5 p_mcangle_it 2.407 p_mcbond_it 1.838 p_multtor_nbd 0.26 p_singtor_nbd 0.175 p_planar_d 0.031 p_angle_d 0.027 p_plane_restr 0.0203 p_bond_d 0.01 p_angle_deg p_hb_or_metal_coord p_chiral_restr p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_transverse_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6608 Nucleic Acid Atoms Solvent Atoms 556 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing