1QJS
mammalian blood serum haemopexin glycosylated-native protein and in complex with its ligand haem
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.9 | 277 | HANGING DROP, 4 DEGREES CENTIGRADE. RESEVOIR SOLUTION: 15-22% PEG 6000, 0.1-0.2 M TRIS HCL PH 7.9, 0.05-0.1 M EDTA, 0.05-0.2 NACL, PROTEIN COMPLEX SOLUTION: 65 MG/ML IN 0.01 M TRIS PH 7.9, 0.01 M NACL, 0.1 M EDTA |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.04 | 40 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 103.9 | α = 90 |
b = 69.9 | β = 108.16 |
c = 151.81 | γ = 90 |
Symmetry | |
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Space Group | C 1 2 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | IMAGE PLATE | RIGAKU IMAGE PLATE | COLLIMATOR | 1997-06-15 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | ROTATING ANODE |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 2.9 | 20 | 97.5 | 0.064 | 6.2 | 2.2 | 20915 | 44 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 2.9 | 3.05 | 87.5 | 0.251 | 2.2 | 2 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Cut-off Sigma (F) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free Selection Details | Mean Isotropic B | ||||
X-RAY DIFFRACTION | SIR | THROUGHOUT | 1HXN AND 1FBL | 2.9 | 20 | 2.5 | 20915 | 101 | 97.5 | 0.251 | 0.255 | 0.36 | 0.312 | RANDOM | 39 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
p_transverse_tor | 29.5 |
p_staggered_tor | 23.5 |
p_planar_tor | 15.1 |
p_multtor_nbd | 0.235 |
p_singtor_nbd | 0.193 |
p_angle_d | 0.041 |
p_bond_d | 0.013 |
p_angle_deg | |
p_planar_d | |
p_hb_or_metal_coord |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 6578 |
Nucleic Acid Atoms | |
Solvent Atoms | |
Heterogen Atoms | 108 |
Software
Software | |
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Software Name | Purpose |
DENZO | data reduction |
Agrovata | data scaling |
ROTAVATA | data scaling |
AMoRE | phasing |
MAMA | phasing |
REFMAC | refinement |