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CEN (Centroradialis) protein from Antirrhinum
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BD9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 1:1 MIX OF 13MG/ML CEN SOLUTION (10MM HEPES, 50MM NACL. PH 7) WITH 1.8 - 2.1 M NACL BUFFERED WITH 100MM SODIUM ACETATE AT PH 5.4 - 5.6
Crystal Properties Matthews coefficient Solvent content 2.3 39.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.89 α = 90 b = 77.65 β = 90 c = 117.97 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 1999-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX7.2 SRS PX7.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 40 94.9 0.057 22.4 4.2 28860 19.29
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.99 91.4 0.226 4.6 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BD9 1.9 40 27357 1457 94.6 0.212 0.2007 0.25 SHELLS 27.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.4 p_staggered_tor 14.4 p_planar_tor 3.9 p_scangle_it 2.751 p_mcangle_it 2.45 p_scbond_it 1.771 p_mcbond_it 1.607 p_multtor_nbd 0.24 p_singtor_nbd 0.174 p_xyhbond_nbd 0.154
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 27.4 p_staggered_tor 14.4 p_planar_tor 3.9 p_scangle_it 2.751 p_mcangle_it 2.45 p_scbond_it 1.771 p_mcbond_it 1.607 p_multtor_nbd 0.24 p_singtor_nbd 0.174 p_xyhbond_nbd 0.154 p_planar_d 0.039 p_angle_d 0.034 p_plane_restr 0.0234 p_bond_d 0.013 p_chiral_restr 0.0115 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2450 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing