X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5293PEG 2000, LiSO4, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0239.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.657α = 90
b = 46.31β = 112.16
c = 34.593γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2002-12-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X110.8126EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
112599.80.0637.63.4561978119.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.0299.60.2353.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONAB INITIO PHASINGTHROUGHOUT12516197858818316599.770.137890.137060.15316RANDOM9.916
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.220.31-0.160.17
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.61
r_scangle_it2.039
r_sphericity_free1.697
r_sphericity_bonded1.506
r_angle_refined_deg1.402
r_scbond_it1.309
r_mcangle_it1.248
r_angle_other_deg0.789
r_mcbond_it0.771
r_rigid_bond_restr0.674
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.61
r_scangle_it2.039
r_sphericity_free1.697
r_sphericity_bonded1.506
r_angle_refined_deg1.402
r_scbond_it1.309
r_mcangle_it1.248
r_angle_other_deg0.789
r_mcbond_it0.771
r_rigid_bond_restr0.674
r_nbd_refined0.445
r_nbd_other0.247
r_symmetry_vdw_other0.199
r_xyhbond_nbd_refined0.161
r_symmetry_hbond_refined0.133
r_symmetry_vdw_refined0.094
r_nbtor_other0.081
r_chiral_restr0.07
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1009
Nucleic Acid Atoms
Solvent Atoms251
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
ACORNphasing